Short Description
Illumina MiSeq i100 plus zur mikrobiellen Genomsequenzierung
Contact Person
Werner Ruppitsch
Research Services
Illumina short-read Genomsequenzierung diverser Mikroorganismen (Bakterien und Pilze)
Nachweis von Virulenz- und Resistenzgenen, Plasmiden, MGE's
Phylogenetische Analysen
Ausbruchsabklärung
Methods & Expertise for Research Infrastructure
Genombasierte Charakterisierung, Detektion von Virulenz- und Resistenzgenen, Plasmiden, MGE's, Phylogenie diverser Mikroorganismen (Pilze und Bakterien) und Metagenomik
Nach Absprache
Linking Gut Microbiome and Dietary Habits for Personalized Nutrition in Montenegro – NutriBioMe
2025-2028
Aleksandra Martinovic - Universität Donja Gorica
Veterinär-Projekt Ruanda
2025 - 2027
Igor Loncaric - Veterinämedizinische Universität Wien
2025-2028
Aleksandra Martinovic - Universität Donja Gorica
Veterinär-Projekt Ruanda
2025 - 2027
Igor Loncaric - Veterinämedizinische Universität Wien
Kerschner H, Jernej L, Cabal A, Hyden P, Machherndl-Spandl S, Berning L, Blaimschein A, Ruppitsch W, Apfalter P, Hartl R. (2025) Successful termination of a multi-year wastewater-associated outbreak of NDM-5-carrying E. coli in a hemato-oncological center. Antimicrob Resist Infect Control. 14:27.
Marek L, Irimaso E, Turikumwenayo JB, Mukamulisa B, Ndishimye P, Muragijemariya F, Cabal-Rosel A, Desvars-Larrive A, Fischer OW, Szostak MP, Müller E, Braun SD, Ehling-Schulz M, Spergser J, Grunert T, Ruppitsch W, Feßler AT, Schwarz S, Monecke S, Ehricht R, Künzel F, Loncaric I. (2025) Staphylococcus aureus in Rwandan dogs predominantly representing human-associated lineages. Lett Appl Microbiol. ovaf065.
Rath A, Kieninger B, Mirzaliyeva N, Werner G, Bender JK, Fischer MA, Cabal-Rosel A, Ruppitsch W, Seth-Smith H, Egli A, Halabi M, Hörtenhuber A, Prammer W, Salaheddin Y, Kerschner H, Hartl R, Ehrenschwender M, Ambrosch A, Kalinowski J, Klages LJ, Rückert-Reed C, Busche T, Caplunik-Pratsch A, Eichner A, Fritsch J, Schneider-Brachert W. (2025) Spread of the novel vancomycin-resistant Enterococcus faecium strain ST1299/vanA from local level in Germany to cross-border level in Austria, 2018 to 2022. Euro Surveill. 30:pii=2400389.
Prior K, Becker K, Brandt C, Cabal Rosel A, Dabernig-Heinz J, Kohler C, Lohde M, Ruppitsch W, Schuler F, Wagner GE, Mellmann A. (2025). Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with Nanopore sequencing data. J Clin Microbiol. 63:e0036925.
Daza-Prieto B, Raicevic N, Hyden P, Cabal A, Ladstätter J, Richter S, Stöger A, Mach RL, Martinovic A, Ruppitsch W. (2025) Ewingella docleensis sp. nov. isolated from artisanal Montenegrin komanski cheese. The Microbe. 8:100449.
Teixeira P, Ramos M, Riviere R, Azevedo M, Ferreira M, Cano MM, Vieira P, Reis L, Matias R, Rodrigues J, Menezes C, Rosado T, Sequeira A, Moreira O, Ruppitsch W, Cabal Rosel A, Mo SS, Dias E, Woegerbauer M, Canica M, Manageiro V. (2025) Genomic Epidemiology and Resistome Dymamics of Enterobacter Species in a Portuguese Open Air Laboratory: The Emergence of the FRI-8 Carbapenemase. Front Microbiol. 16:1593872.
Barta L, Stöger A, Polzer D, Ruppitsch W, Schmoll F, Sattler T. (2025) Phenotypical and genotypical resistance testing of Pasteurella multocida isolated from different animal species in Austria. Front Vet Sci. 12:1640536.
Kieninger B, Wagner GE, Rath A, Eichner A, Fritsch J, Caplunik-Pratsch A, Alikhani J, Heydarzadeh-Ghamsary P, Cabal-Rosel A, Ruppitsch W, Harmsen D, Abdulla MR, Ulm L, Becker K, Schneider-Brachert W, Kohler C. 2025. Development and validation of a core genome multilocus sequence typing scheme for Citrobacter freundii: application in outbreak investigations and comparative analysis across the Citrobacter genus. J Clin Microbiol. 63:e00860-25.
Hamar F, Loncaric I, Bernreiter-Hofer T, Cabal Rosel A, Stöger A, Palle-Reisch M, Ruppitsch W, Kaesbohrer A, Buzanich-Ladinig A, Bluemlinger M, Schwarz L. (2025) MRSA in pig farming: the emerging role of flies in antimicrobial resistance: a cross-sectional study. Porc Health Manag. 11:46.
Daza Prieto B, Ladstätter J, Murer A, Lenkh A, Ruppitsch W, Pietzka A. (2025) Complete genome of Listeria aquatica strain MRL-25-00004 from a cheese ripening environment in Austria. Microb Resour Announc. 14:e0093125.
Szojka ZI, Florian DM, Cabal A, Ruppitsch W, Aberle SW, Otto F, Camp JV. (2025) Imported aseptic meningitis due to Toscana virus infection in Austria: A detailed case series from 2023 including a nationwide retrospective analysis. Int J Infect Dis. 108161.
Irimaso E, Hagenimana V, Nzabamwita E, Blümlinger M, Fischer OW, Schwarz L, Szostak MP, Makarova O, Rosel AC, Ruppitsch W, Müller E, Feßler AT, Braun SD, Schwarz S, Monecke S, Ehricht R, Tkalcic S, Ntakirutimana C, Spergser J, Verhovsek D, Loncaric I. (2025) Third-Generation Cephalosporin-Resistant Enterobacterales and Methicillin-Resistant Staphylococcus aureus (MRSA) in Pigs in Rwanda. Animals (Basel). 16:122.
Berktold M, Daza Prieto B, Govrins M, Huber S, Grubwieser P, Fleischer V, Cubertorer Navarro M, Mösenbacher T, Edler E, Jauernegger F, Mayrhofer T, Köberl-Jelovcan S, Lass-Flörl C, Ruppitsch W, Schmutzhard J. (2025) Genome of Achromobacter xylosoxidans strain MUI-24198746 isolated from a 22-month-old child with persistent otorrhea. Microb Resour Announc. In revision
Parra Flores J, Daza Prieto B, Troncoso M, Figueroa G, Reyes-Fuentes MI, Holý O, Cruz Córdova A, Ruppitsch W, Forsythe SJ. (2026) Genotypic and Phenotypic Characterization of Cronobacter spp. Strains Isolated from Powdered Milk Formulas and Dairy Production Environments. Microorganisms 14:593.
Steixner S, Vahedi-Shahandashti R, Eisele D, Ruppitsch W, Lass-Flörl C. (2026) Six-month surveillance of Candida parapsilosis in Tyrol, Austria: high-risk ST11 lineage and early, heterogeneous fluconazole resistance. Front Cell Infect Microbiol. 16:1771561.
Marek L, Irimaso E, Turikumwenayo JB, Mukamulisa B, Ndishimye P, Muragijemariya F, Cabal-Rosel A, Desvars-Larrive A, Fischer OW, Szostak MP, Müller E, Braun SD, Ehling-Schulz M, Spergser J, Grunert T, Ruppitsch W, Feßler AT, Schwarz S, Monecke S, Ehricht R, Künzel F, Loncaric I. (2025) Staphylococcus aureus in Rwandan dogs predominantly representing human-associated lineages. Lett Appl Microbiol. ovaf065.
Rath A, Kieninger B, Mirzaliyeva N, Werner G, Bender JK, Fischer MA, Cabal-Rosel A, Ruppitsch W, Seth-Smith H, Egli A, Halabi M, Hörtenhuber A, Prammer W, Salaheddin Y, Kerschner H, Hartl R, Ehrenschwender M, Ambrosch A, Kalinowski J, Klages LJ, Rückert-Reed C, Busche T, Caplunik-Pratsch A, Eichner A, Fritsch J, Schneider-Brachert W. (2025) Spread of the novel vancomycin-resistant Enterococcus faecium strain ST1299/vanA from local level in Germany to cross-border level in Austria, 2018 to 2022. Euro Surveill. 30:pii=2400389.
Prior K, Becker K, Brandt C, Cabal Rosel A, Dabernig-Heinz J, Kohler C, Lohde M, Ruppitsch W, Schuler F, Wagner GE, Mellmann A. (2025). Accurate and reproducible whole-genome genotyping for bacterial genomic surveillance with Nanopore sequencing data. J Clin Microbiol. 63:e0036925.
Daza-Prieto B, Raicevic N, Hyden P, Cabal A, Ladstätter J, Richter S, Stöger A, Mach RL, Martinovic A, Ruppitsch W. (2025) Ewingella docleensis sp. nov. isolated from artisanal Montenegrin komanski cheese. The Microbe. 8:100449.
Teixeira P, Ramos M, Riviere R, Azevedo M, Ferreira M, Cano MM, Vieira P, Reis L, Matias R, Rodrigues J, Menezes C, Rosado T, Sequeira A, Moreira O, Ruppitsch W, Cabal Rosel A, Mo SS, Dias E, Woegerbauer M, Canica M, Manageiro V. (2025) Genomic Epidemiology and Resistome Dymamics of Enterobacter Species in a Portuguese Open Air Laboratory: The Emergence of the FRI-8 Carbapenemase. Front Microbiol. 16:1593872.
Barta L, Stöger A, Polzer D, Ruppitsch W, Schmoll F, Sattler T. (2025) Phenotypical and genotypical resistance testing of Pasteurella multocida isolated from different animal species in Austria. Front Vet Sci. 12:1640536.
Kieninger B, Wagner GE, Rath A, Eichner A, Fritsch J, Caplunik-Pratsch A, Alikhani J, Heydarzadeh-Ghamsary P, Cabal-Rosel A, Ruppitsch W, Harmsen D, Abdulla MR, Ulm L, Becker K, Schneider-Brachert W, Kohler C. 2025. Development and validation of a core genome multilocus sequence typing scheme for Citrobacter freundii: application in outbreak investigations and comparative analysis across the Citrobacter genus. J Clin Microbiol. 63:e00860-25.
Hamar F, Loncaric I, Bernreiter-Hofer T, Cabal Rosel A, Stöger A, Palle-Reisch M, Ruppitsch W, Kaesbohrer A, Buzanich-Ladinig A, Bluemlinger M, Schwarz L. (2025) MRSA in pig farming: the emerging role of flies in antimicrobial resistance: a cross-sectional study. Porc Health Manag. 11:46.
Daza Prieto B, Ladstätter J, Murer A, Lenkh A, Ruppitsch W, Pietzka A. (2025) Complete genome of Listeria aquatica strain MRL-25-00004 from a cheese ripening environment in Austria. Microb Resour Announc. 14:e0093125.
Szojka ZI, Florian DM, Cabal A, Ruppitsch W, Aberle SW, Otto F, Camp JV. (2025) Imported aseptic meningitis due to Toscana virus infection in Austria: A detailed case series from 2023 including a nationwide retrospective analysis. Int J Infect Dis. 108161.
Irimaso E, Hagenimana V, Nzabamwita E, Blümlinger M, Fischer OW, Schwarz L, Szostak MP, Makarova O, Rosel AC, Ruppitsch W, Müller E, Feßler AT, Braun SD, Schwarz S, Monecke S, Ehricht R, Tkalcic S, Ntakirutimana C, Spergser J, Verhovsek D, Loncaric I. (2025) Third-Generation Cephalosporin-Resistant Enterobacterales and Methicillin-Resistant Staphylococcus aureus (MRSA) in Pigs in Rwanda. Animals (Basel). 16:122.
Berktold M, Daza Prieto B, Govrins M, Huber S, Grubwieser P, Fleischer V, Cubertorer Navarro M, Mösenbacher T, Edler E, Jauernegger F, Mayrhofer T, Köberl-Jelovcan S, Lass-Flörl C, Ruppitsch W, Schmutzhard J. (2025) Genome of Achromobacter xylosoxidans strain MUI-24198746 isolated from a 22-month-old child with persistent otorrhea. Microb Resour Announc. In revision
Parra Flores J, Daza Prieto B, Troncoso M, Figueroa G, Reyes-Fuentes MI, Holý O, Cruz Córdova A, Ruppitsch W, Forsythe SJ. (2026) Genotypic and Phenotypic Characterization of Cronobacter spp. Strains Isolated from Powdered Milk Formulas and Dairy Production Environments. Microorganisms 14:593.
Steixner S, Vahedi-Shahandashti R, Eisele D, Ruppitsch W, Lass-Flörl C. (2026) Six-month surveillance of Candida parapsilosis in Tyrol, Austria: high-risk ST11 lineage and early, heterogeneous fluconazole resistance. Front Cell Infect Microbiol. 16:1771561.