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Other research infrastructure Clusters „EOSC“ Monitoring „DigiRI Call“

High-performance large-scale storage system for digital histological image data (Ceph cluster with backup storage)

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JKU - Johannes Kepler University Linz

Linz | Website


Short Description

This large-scale storage system is a high-performance server solution that has been developed for storing and processing digital histological image data (whole slide images).
The system is based on a Ceph cluster, which offers a net capacity of 264 TB and ensures high reliability and data availability. The data is distributed across three servers with a total capacity of 815 TB.
In addition, a backup storage system with a total capacity of 520 TB is available to ensure long-term data backup and recovery.

The storage is part of the project ‘Digital Pathology – Creation of an Interuniversity Compatible Infrastructure’. This project has the following objectives:
a) To continuously create and store section preparations as whole slide image data on a very large scale.
b) To collect standardised metadata and compile it in a cross-location, anonymised data catalogue that will be linked to the European Research Infrastructure (EOSC).
This data will be used for inter-university development and validation of AI algorithms, particularly in the field of digital pathology.

Contact Person

Sabina Köfler

Research Services

The storage system is currently only available to research institutes participating in the research project ‘Digital Pathology – Creation of an Interuniversity Compatible Infrastructure’.

Methods & Expertise for Research Infrastructure

The storage system forms the basis for data analysis and machine learning in the field of computational pathology in conjunction with the high-resolution whole slide images created from digital pathology.

Terms of Use

For collaborations on computational pathology, please contact the project manager.

Cooperation Partners

Diagnostic and Research Institute of Pathology, Medical University of Graz
Institute of Pathology, Medical University Innsbruck
Institute of Pathology, University of Veterinary Medicine Vienna
Department of Pathology, Medical University of Vienna
Institute of Computer Graphics and Vision, Graz University of Technology

Contact

Sabina Köfler
Klinisches Institut für Pathologie und Molekularpathologie
+43 732 2468 8932
pathologie@jku.at
https://www.jku.at/pathologie

Location

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